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Publication List

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  1. Arturas Meskauskas, Johnathan R. Russ and Jonathan D. Dinman. Structure/function analysis of yeast ribosomal protein L2. NAR. 2008 Jan 18.
  2. Rasa Rakauskaite and Jonathan D. Dinman. rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance. NAR. 2008 01 18.
  3. Stephen Swatkoski, Peter Gutierrez, Colin Wynne, Alexey Petrov, Jonathan D. Dinman, Nathan Edwards, and Catherine Fenselau. Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications Proteome Res. 2008 Jan 12.
  4. Chaudhuri S, Vyas K, Kapasi P, Komar AA, Dinman JD, Barik S, Mazumder B.. Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation. RNA. 2007 Oct 5.
  5. Swatkoski S, Gutierrez P, Ginter J, Petrov A, Dinman JD, Edwards N, Fenselau C. Integration of Residue-Specific Acid Cleavage into Proteomic Workflows. J Proteome Res. 2007 Sep 29.
  6. Plant EP, Nguyen P, Russ JR, Pittman YR, Nguyen T, Quesinberry JT, Kinzy TG, Dinman JD. Differentiating between near- and non-cognate codons in Saccharomyces cerevisiae. PLoS ONE. 2007 Jun 13;2(6):e517.
  7. Meskauskas A, Dinman JD. Ribosomal protein L3: gatekeeper to the A site. Mol Cell. 2007 Mar 23;25(6):877-88.
  8. Baxter-Roshek JL, Petrov AN, Dinman JD. Optimization of Ribosome Structure and Function by rRNA Base Modification. PLoS ONE. 2007 Jan 24;2:e174.
  9. Jacobs JL, Belew AT, Rakauskaite R, Dinman JD. Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae NAR 2006 Dec7
  10. Rakauskaite R, Dinman JD. An Arc of Unpaired "Hinge Bases" Facilitates Information Exchange among Functional Centers of the Ribosome. Mol Cell Biol. 2006 Dec;26(23):8992-9002.
  11. Dinman JD. Programmed Ribosomal Frameshifting Goes beyond Viruses. Microbe. 2006 Nov;1(11):521-527.
  12. Song H, Baxter-Roshek JL, Dinman JD, Vakharia VN. Efficient expression of the 15-kDa form of infectious pancreatic necrosis virus VP5 by suppression of a UGA codon. Virus Res. 2006 Dec;122(1-2):61-8.
  13. Plant EP, Dinman JD. Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems. RNA. 2006 Apr;12(4):666-73.
  14. Muldoon-Jacobs KL, Dinman JD. Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting. Eukaryot Cell. 2006 Apr;5(4):762-70.
  15. Meskauskas A, Petrov AN, Dinman JD. Identification of functionally important amino acids of ribosomal protein l3 by saturation mutagenesis. Mol Cell Biol. 2005 Dec;25(24):10863-74.
  16. Kiparisov S, Petrov A, Meskauskas A, Sergiev PV, Dontsova OA, Dinman JD. Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Mol Genet Genomics. 2005 Jul 27;:1-13.
  17. Dontsova OA and Dinman JD.5S rRNA: Structure and Function from Head to Toe. IJBS 2005 June 1(1): 2-7.    Html2pdf version    Figures
  18. Plant EP, Perez-Alvarado GC, Jacobs JL, Mukhopadhyay B, Hennig M, Dinman JD. A Three-Stemmed mRNA Pseudoknot in the SARS Coronavirus Frameshift Signal. PLoS Biol. 2005 May 17;3(6):e172.
  19. Plant EP, Dinman JD. Torsional restraint: a new twist on frameshifting pseudoknots. NAR 2005 Mar 30;33(6):1825-33.
  20. Jacobs JL, Dinman JD. Systematic analysis of bicistronic reporter assay data. NAR 2004 32(20):e160.
  21. Harger JW, Dinman JD. Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough. RNA. 2004 Nov;10(11):1721-9.
  22. Petrov A, Meskauskas A, and Dinman JD. Ribosomal Protein L3: Influence on Ribosome Structure and Function. RNA biology (1), 59-65 (2004).
  23. Plant EP, Wang P, Jacobs JL and Dinman JD. A programmed –1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element. NAR (32), 784-790 (2004).
  24. Meskauskas A, Harger JW, Muldoon Jacobs KL, Dinman JD. Decreased peptidyltransferase activity correlates with increased programmed -1 ribosomal frameshifting and viral maintenance defects in the yeast Saccharomyces cerevisiae. RNA (8), 982-992 (2003).
  25. Harger JW, Dinman JD. An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. RNA (8), 1019-1024 (2003).
  26. Meskauskas,A., Baxter,J.L., Carr,E.A., Yasenchak,J., Gallagher,J.E., Baserga,S.J., and Dinman,J.D. Delayed rRNA processing results in significant ribosome biogenesis and functional defects. Mol. Cell Biol. 23, 1602-1613 (2003).
  27. Plant, E.P., Muldoon Jacobs, K.L., Harger, J.W., Meskauskas, A., Jacobs, J.L., Baxter, J.L., Petrov, A.N., Dinman, J.D. The 9-Å solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA (9), 168-174 (2003).
  28. Harger,J., Meskauskas,A. & Dinman,J. An 'integrated model' of programmed ribosomal frameshifting. Trends Biochem. Sci. 27, 448 (2002). [ COVER ]
  29. Goss,K.T. et al. New targets for antivirals: the ribosomal a-site and the factors that interact with it. Virology 300, 60 (2002).
  30. Dinman,J.D. et al. The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure. Proc. Natl. Acad. Sci. U. S. A 99, 5331-5336 (2002).
  31. Smith,M.W., Meskauskas,A., Wang,P., Sergiev,P.V. & Dinman,J.D. Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae. Mol. Cell Biol. 21, 8264-8275 (2001).
  32. Meskauskas,A. & Dinman,J.D. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae. RNA. 7, 1084-1096 (2001).
  33. Harger,J.W., Meskauskas,A., Nielsen,J., Justice,M.C. & Dinman,J.D. Ty1 retrotransposition and programmed +1 ribosomal frameshifting require the integrity of the protein synthetic translocation step. Virology 286, 216-224 (2001).
  34. Hudak,K.A., Hammell,A.B., Yasenchak,J., Tumer,N.E. & Dinman,J.D. A C-terminal deletion mutant of pokeweed antiviral protein inhibits programmed +1 ribosomal frameshifting and Ty1 retrotransposition without depurinating the sarcin/ricin loop of rRNA. Virology 279, 292-301 (2001).
  35. Dinman,J., Ruiz-Echevarria,M., Wang,W. & Peltz,S. The case for the involvement of the Upf3p in programmed -1 ribosomal frameshifting. RNA. 6, 1685-1686 (2000).
  36. Liermann,R.T., Dinman,J.D., Sylvers,L.A. & Jackson,J.C. Improved purification of the double-stranded RNA from killer strains of yeast. Biotechniques 28, 64-65 (2000).
  37. Lopinski,J.D., Dinman,J.D. & Bruenn,J.A. Kinetics of ribosomal pausing during programmed -1 translational frameshifting. Mol. Cell Biol. 20, 1095-1103 (2000).
  38. Cui,Y., Gonzalez,C.I., Kinzy,T.G., Dinman,J.D. & Peltz,S.W. Mutations in the MOF2/SUI1 gene affect both translation and nonsense- mediated mRNA decay. RNA. 5, 794-804 (1999).
  39. Sheikh,M.S. et al. Cloning and characterization of a human genotoxic and endoplasmic reticulum stress-inducible cDNA that encodes translation initiation factor 1(eIF1(A121/SUI1)). J. Biol. Chem. 274, 16487-16493 (1999).
  40. Hammell,A.B., Taylor,R.C., Peltz,S.W. & Dinman,J.D. Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases. Genome Res. 9, 417-427 (1999).
  41. Hudak,K.A., Dinman,J.D. & Tumer,N.E. Pokeweed antiviral protein accesses ribosomes by binding to L3. J. Biol. Chem. 274, 3859-3864 (1999).
  42. Peltz,S.W. et al. Ribosomal protein L3 mutants alter translational fidelity and promote rapid loss of the yeast killer virus. Mol. Cell Biol. 19, 384-391 (1999).
  43. Ruiz-Echevarria,M.J., Yasenchak,J.M., Han,X., Dinman,J.D. & Peltz,S.W. The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation. Proc. Natl. Acad. Sci. U. S. A 95, 8721-8726 (1998).
  44. Dinman,J.D., Ruiz-Echevarria,M.J. & Peltz,S.W. Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents. Trends Biotechnol. 16, 190-196 (1998).
  45. Cui,Y., Dinman,J.D., Kinzy,T.G. & Peltz,S.W. The Mof2/Sui1 protein is a general monitor of translational accuracy. Mol. Cell Biol. 18, 1506-1516 (1998).
  46. Tumer,N.E., Parikh,B.A., Li,P. & Dinman,J.D. The pokeweed antiviral protein specifically inhibits Ty1-directed +1 ribosomal frameshifting and retrotransposition in Saccharomyces cerevisiae. J. Virol. 72, 1036-1042 (1998).
  47. Dinman,J.D. & Kinzy,T.G. Translational misreading: mutations in translation elongation factor 1alpha differentially affect programmed ribosomal frameshifting and drug sensitivity. RNA. 3, 870-881 (1997).
  48. Dinman,J.D., Ruiz-Echevarria,M.J., Czaplinski,K. & Peltz,S.W. Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems. Proc. Natl. Acad. Sci. U. S. A 94, 6606-6611 (1997).
  49. Cui,Y., Dinman,J.D. & Peltz,S.W. Mof4-1 is an allele of the UPF1/IFS2 gene which affects both mRNA turnover and -1 ribosomal frameshifting efficiency. EMBO J. 15, 5726-5736 (1996).
  50. Dinman,J.D. Ribosomal frameshifting in yeast viruses. Yeast 11, 1115-1127 (1995).
  51. Dinman,J.D. & Wickner,R.B. 5 S rRNA is involved in fidelity of translational reading frame. Genetics 141, 95-105 (1995).
  52. Triteeraprapab,S. et al. Molecular cloning of a gene expressed during early embryonic development in Onchocerca volvulus. Mol. Biochem. Parasitol. 69, 161-171 (1995).
  53. Balasundaram,D., Dinman,J.D., Tabor,C.W. & Tabor,H. SPE1 and SPE2: two essential genes in the biosynthesis of polyamines that modulate +1 ribosomal frameshifting in Saccharomyces cerevisiae. J. Bacteriol. 176, 7126-7128 (1994).
  54. Vermut,M., Widner,W.R., Dinman,J.D. & Wickner,R.B. Sequence of MKT1, needed for propagation of M2 satellite dsRNA of the L- A virus of Saccharomyces cerevisiae. Yeast 10, 1477-1479 (1994).
  55. Balasundaram,D., Dinman,J.D., Wickner,R.B., Tabor,C.W. & Tabor,H. Spermidine deficiency increases +1 ribosomal frameshifting efficiency and inhibits Ty1 retrotransposition in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A 91, 172-176 (1994).
  56. Dinman,J.D. & Wickner,R.B. Translational maintenance of frame: mutants of Saccharomyces cerevisiae with altered -1 ribosomal frameshifting efficiencies. Genetics 136, 75-86 (1994).
  57. Tercero,J.C., Dinman,J.D. & Wickner,R.B. Yeast MAK3 N-acetyltransferase recognizes the N-terminal four amino acids of the major coat protein (gag) of the L-A double-stranded RNA virus. J. Bacteriol. 175, 3192-3194 (1993).
  58. Dinman,J.D. & Wickner,R.B. Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation. J. Virol. 66, 3669-3676 (1992).
  59. Dinman,J.D., Icho,T. & Wickner,R.B. A -1 ribosomal frameshift in a double-stranded RNA virus of yeast forms a gag-pol fusion protein. Proc. Natl. Acad. Sci. U. S. A 88, 174-178 (1991).
  60. Dinman,J.D. & Scott,A.L. Onchocerca volvulus: molecular cloning, primary structure, and expression of a microfilarial surface-associated antigen. Exp. Parasitol. 71, 176-188 (1990).
  61. Scott,A.L., Dinman,J., Sussman,D.J., Yenbutr,P. & Ward,S. Major sperm protein genes from Onchocerca volvulus. Mol. Biochem. Parasitol. 36, 119-126 (1989).
  62. Scott,A.L., Dinman,J., Sussman,D.J. & Ward,S. Major sperm protein and actin genes in free-living and parasitic nematodes. Parasitology 98 Pt 3, 471-478 (1989).
  63. Huang,P.C., Morris,S., Dinman,J., Pine,R. & Smith,B. Role of metallothionein in detoxification and tolerance to transition metals. Experientia Suppl 52, 439-446 (1987).
     
Updated January 25, 2007 11:15 AM

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